Journal of Fisheries Science and Technology

Journal of Fisheries Science and Technology

Genetic characteristics of different generations broodstocks of Litopenaeus vannamei (Boone, 1931) in hatchery centers located on the shores of the Persian Gulf in Bushehr province

Document Type : Original Research

Authors
1 Iranian Shrimp Research Center, Iranian Fisheries Science Research Institute, Agricultural Research, Education & Extention Organization (AREEO), Bushehr, Iran.
2 Department of Marine Biotechnology, Persian Gulf Institute, Persian Gulf University, Bushehr, Iran.
3 Iranian Fisheries Science Research Institute, Agricultural Research, Education & Extention Organization (AREEO), Bushehr, Iran.
Abstract
The aim of this study was to identify different population broodstocks of Litopenaeus vannamei and effect of inbreeding and cross-inbreeding on genetic characteristics and inbreeding coefficient of offspring in the next generation. According to origin of broodstocks kept in hatcheries of Bushehr province in the first generation, different populations were identified through microsatellite method from Hybrid, High health and Molokai stocks then, in the next generations genetic characteristics of offspring from their inbreeding and cross-inbreeding were examined. The results showed that the amount of genetic diversity in Molokai and High Health stocks (0.46±0.09 and 0.50±0.07) was more than hybrid stock (0.38±0.06). The inbreeding coefficients of Molokai, High Health and hybrid stocks were 0.14, 0.31 and 0.41, respectively. Due to the low genetic distance between the hybrid and Molokai stocks, after mixing them together Molokai and High Health populations were introduced as the first generation broodstock. In the second generation, despite the high genetic diversity in the offspring of Molokai×High Health (0.47±0.12) and High Health×Molokai (0.39±0.08) than the offspring of Molokai×Molokai (0.19±0.04) and High Health× High Health (0.11±0.03), these values were reduced compared to the first generation. The lowest and highest inbreeding coefficients were related to the offspring of Molokai×High Health (0.268 ±0.18) and Molokai× Molokai (0.853±0.145), respectively. According to the results, it can be said that the lack of knowledge about the genetic characteristics of broodstocks and mating between individual relationships (full and half sib) can reduce genetic characteristics and genetic depression due to increased inbreeding coefficients in next generations.
Keywords

Subjects


1. FAO. Aquaculture production (quantities and values) 1950–2019. In: FishStatJ -Software for Fishery Statistical Time Series. FAO Fisheries and Aquaculture Department, Rome. 2019.
2. Li E, Xu C, Wang X, Wang S, Zhao Q, Zhang M, et al. Gut microbiota and its modulation for healthy farming of Pacific white shrimp Litopenaeus vannamei. Reviews in Fisheries Science & Aquaculture. 2018;26(3):381-99.
3. Pazir MK, Simruni MM, Hossini J. Detection and evaluation of the genetic variation Litopenaeus vannamei for different seed. 2016. Pp. 80. (in Persian).
4. Organization. IF. Statistical Yearbook of Iran Fisheries Organization 1397-1392. Deputy of Planning and Resource Management - Planning and Budget Office - Planning and Statistics Group.; 2019. Pp. 33. (in Persian).
5. Pazir MK, Ghaednia B, Aeinjamshid K, Pourkazemi M, Matinfar A, Afsharnasab M. Evalution of genetic different between Litopenaeus vannamei of different race. . 2017. Pp. 46. (in Persian).
6. Gjedrem T, Akvaforsk Å. Selection and breeding programs in aquaculture: Springer; 2005.
7. Sbordoni V, De Matthaeis E, Sbordoni MC, La Rosa G, Mattoccia M. Bottleneck effects and the depression of genetic variability in hatchery stocks of Penaeus japonicus (Crustacea, Decapoda). Aquaculture. 1986;57(1-4):239-51.
8. Bierne N, Beuzart I, Vonau V, Bonhomme F, Bédier E. Microsatellite-associated heterosis in hatchery-propagated stocks of the shrimp Penaeus stylirostris. Aquaculture. 2000;184(3-4):203-19.
9. Moss DR, Arce SM, Otoshi CA, Doyle RW, Moss SM. Effects of inbreeding on survival and growth of Pacific white shrimp Penaeus (Litopenaeus) vannamei. Aquaculture. 2007;272:S30-S7.
10. Valles-Jimenez R, Cruz P, Perez-Enriquez R. Population genetic structure of Pacific white shrimp (Litopenaeus vannamei) from Mexico to Panama: microsatellite DNA variation. Marine Biotechnology. 2004;6(5):475-84.
11. García-Alegría AM, Anduro-Corona I, Pérez-Martínez CJ, Guadalupe Corella-Madueño MA, Rascón-Durán ML, Astiazaran-Garcia H. Quantification of DNA through the NanoDrop Spectrophotometer: Methodological Validation Using Standard Reference Material and Sprague Dawley Rat and Human DNA. International Journal of Analytical Chemistry. 2020;2020.
12. Wolfus GM, Garcia DK, Alcivar-Warren A. Application of the microsatellite technique for analyzing genetic diversity in shrimp breeding programs. Aquaculture. 1997;152(1-4):35-47.
13. Cruz P, Ibarra AM, Mejia-Ruiz H, Gaffney PM, Pérez-Enríquez R. Genetic variability assessed by microsatellites in a breeding program of Pacific white shrimp (Litopenaeus vannamei). Marine Biotechnology. 2004;6(2):157-64.
14. Freitas PD, Jesus CM, Galetti Jr PM. Isolation and characterization of new microsatellite loci in the Pacific white shrimp Litopenaeus vannamei and cross‐species amplification in other penaeid species. Molecular Ecology Notes. 2007;7(2):324-6.
15. Garcia DK, Alcivar-Warren A. Characterization of 35 new microsatellite genetic markers for the pacific whiteleg shrimp, Litopenaeus vannamei: Their usefulness for studying genetic diversity of wild and cultured stocks, tracing pedigree in breeding programs, and linkage mapping. Journal of shellfish research. 2007;26(4):1203-16.
16. Borrell Y, Espinosa G, Romo J, Blanco G, Vázquez E, Sánchez J. DNA microsatellite variability and genetic differentiation among natural populations of the Cuban white shrimp Litopenaeus schmitti. Marine Biology. 2004;144(2):327-33.
17. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 1978;89(3):583-90.
18. Doyle RW. Inbreeding and disease in tropical shrimp aquaculture: a reappraisal and caution. Aquaculture research. 2016;47(1):21-35.
19. Moss SM, Otoshi C, Leung P. Optimizing strategies for growing larger L. vannamei. Global Aquaculture Advocate. 2005;8(5):68-9.
20. Tamayo RJM. Assessment of genetic variability in two lots of white shrimp, Litopenaeus vannamei (Boone, 1931) introduced to Cuba: Universitetet i Tromsø; 2006.
21. Hillen J, Coscia I, Vandeputte M, Herten K, Hellemans B, Maroso F, et al. Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture. 2017;479:742-9.
22. Ren S, Mather PB, Tang B, Hurwood DA. Levels of genetic diversity and inferred origins of Penaeus vannamei culture resources in China: Implications for the production of a broad synthetic base population for genetic improvement. Aquaculture. 2018;491:221-31.
23. Perez-Enriquez R, Hernández-Martínez F, Cruz P. Genetic diversity status of White shrimp Penaeus (Litopenaeus) vannamei broodstock in Mexico. Aquaculture. 2009;297(1-4):44-50.
24. Ren S, Prentis P, Mather PB, Li Y, Tang B, Hurwood DA. Genetic parameters for growth and survival traits in a base population of Pacific white shrimp (Litopenaeus vannamei) developed from domesticated strains in China. Aquaculture. 2020a;523:735148.
25. Goyard E, Arnaud S, Vonau V, Bishoff V, Mouchel O, Pham D, et al. Residual genetic variability in domesticated populations of the Pacific blue shrimp (Litopenaeus stylirostris) of New Caledonia, French Polynesia and Hawaii and some management recommendations. Aquatic Living Resources. 2003;16(6):501-8.
26. Castric V, Bernatchez L, Belkhir K, Bonhomme F. Heterozygote deficiencies in small lacustrine populations of brook charr Salvelinus fontinalis Mitchill (Pisces, Salmonidae): a test of alternative hypotheses. Heredity. 2002;89(1):27-35.
27. Norris A, Bradley D, Cunningham E. Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture. 1999;180(3-4):247-64.
28. Ren S, Mather PB, Prentis P, Li Y, Tang B, Hurwood DA. Quantitative genetic assessment of female reproductive traits in a domesticated pacific white shrimp (Penaeus vannamei) line in China. Scientific reports. 2020b;10(1):1-10.
29. Tan J, Luan S, Cao B, Luo K, Meng X, Kong J. Evaluation of genetic parameters for reproductive traits and growth rate in the Pacific white shrimp Litopenaeus vannamei reared in brackish water. Aquaculture. 2019;511:734244.